PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang05g01190.1
Common NameLR48_Vigan04g245700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 452aa    MW: 51384.3 Da    PI: 4.9015
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang05g01190.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.74.2e-11394442247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +rW++ E++ l+++v+++G+g+Wk+I +  +   + Rt+ ++k++w++ 
   Vang05g01190.1 394 KRWSQLEEDTLKNGVEKFGKGNWKLILNAHQdifEERTEVDLKDKWRNM 442
                      69********************************9************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.867388447IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-12389446IPR009057Homeodomain-like
SMARTSM007171.0E-6392445IPR001005SANT/Myb domain
PfamPF002496.2E-9394442IPR001005SANT/Myb domain
CDDcd116601.30E-17394444No hitNo description
SuperFamilySSF466894.52E-14395447IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MDAHGQWLLE FLLRSPDTEN KDNLIKDVLR MISVSDLDFR IKKIFLLKTL QNDFSSHSIT  60
ETLLKTLELL EEVFRCDASP VTATMSAAYC AVAVECTIKY LQVNLYNHNA PYLRAVNRIW  120
QLRIPQMIGS GSREGSLLFS VELEQWRKDI ETSVLDLQVR ERLASIDTRR DAIIKLRAFL  180
EEAWTVMDSS FGPLAATEHK RNQEGEVQKC SIVAAENLHL PKTIEVEKIG DCISEELLAK  240
DSLAKIVEVE KVGDCISGEL QDMAKNSLPT TVEVEKVGDC ISEEVQALAK DTLTTTMEDN  300
EDARQTVEAD VSSPQDINDN EADHVEKGQA SIPSNCEQRP NLMEKNSTAR VDEWDSIDGL  360
EGVSRFNLPS PKRRKLPPLK IYKPTDITKR RKAKRWSQLE EDTLKNGVEK FGKGNWKLIL  420
NAHQDIFEER TEVDLKDKWR NMTRYEFANK S*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1372391RRKLPPLKIYKPTDITKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00052PBMTransfer from AT1G15720Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150350.0AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500057.10.0PREDICTED: uncharacterized protein LOC106761076 isoform X2
TrEMBLA0A0L9UI710.0A0A0L9UI71_PHAAN; Uncharacterized protein
TrEMBLA0A0S3RAC80.0A0A0S3RAC8_PHAAN; Uncharacterized protein
STRINGGLYMA06G24730.11e-145(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28243260
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.28e-11MYB_related family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]